Peer-reviewed articles

For citation data and a complete list of publications, please go to ResearcherID, where my public ID is B-2388-2009.

Nr.	Reference
19.	Nunn, BL., Aker, JR., Shaffer, SA., Tsai, S., Strzepek, RF., Boyd, PW., Freeman, TL., Brittnacher, M., Malmstrom, L., Goodlett, DR. Deciphering diatom biochemical pathways via whole-cell proteomics. Aquat Microb Ecol (2009), 55: 241-253.
18.	Malmstroem, L., Hou, L., Atkins, WM., Goodlett, DR. On the use of hydrogen/deuterium exchange mass spectrometry data to improve de novo protein structure prediction. Rapid Commun Mass Spectrom (2009), 23: 459-461.
17.	Goo, YA., Liu, AY., Ryu, S., Shaffer, SA., Malmstrom, L., Page, L., Nguyen, LT., Doneanu, CE., Goodlett, DR. Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics. Prostate (2008), 0: Epub ahread of print.
16.	Pacheco, B., Maccarana, M., Goodlett, DR., Malmstrom, A., Malmstrom, L. Identification of the active site of DS-epimerase 1 and requirement of N-glycosylation for enzyme function. J Biol Chem (2008), 0: Epub ahread of print.
15.	Das, R., Qian, B., Raman, S., Vernon, R., Thompson, J., Bradley, P., Khare, S., Tyka, MD., Bhat, D., Chivian, D., Kim, DE., Sheffler, WH., Malmstrom, L., Wollacott, AM., Wang, C., Andre, I., Baker, D. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins (2007), 1: 118-128.
14.	Malmstrom, L., Riffle, M., Strauss, CE., Chivian, D., Davis, TN., Bonneau, R., Baker, D. Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology. PLoS Biol (2007), 5: e76.
13.	Malmstrom, E., Sennstrom, M., Holmberg, A., Frielingsdorf, H., Eklund, E., Malmstrom, L., Tufvesson, E., Gomez, MF., Westergren-Thorsson, G., Ekman-Ordeberg, G., Malmstrom, A. The importance of fibroblasts in remodelling of the human uterine cervix during pregnancy and parturition. Mol Hum Reprod (2007), 13: 333-41.
12.	Malmstrom, L., Marko-Varga, G., Westergren-Thosson, G., Laurell, T., Malmstrom, J. 2DDB - a bioinformatics solution for analysis of quantitative proteomics data. BMC Bioinformatics (2006), 7: 158.
11.	Kim, DE., Chivian, D., Malmstrom, L., Baker, D. Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM. Proteins (2005), Suppl 7: 193-200.
10.	Chivian, D., Kim, DE., Malmstrom, L., Schonbrun, J., Rohl, CA., Baker, D. Prediction of CASP-6 structures using automated Robetta protocols. Proteins (2005), Suppl 7: 157-66.
9.	Bradley, P., Malmstrom, L., Qian, B., Schonbrun, J., Chivian, D., Kim, DE., Meiler, J., Misura, KM., Baker, D. Free modeling with Rosetta in CASP6. Proteins (2005), Suppl 7: 128-34.
8.	Riffle, M., Malmstrom, L., Davis, TN. The yeast resource center public data repository. Nucleic Acids Res (2005), 33: D378-82.
7.	Cazzanti, L., Gupta, M., Malmstrom, L., Baker, D., Quality Assessment of Low Free-Energy Protein Structure Predictions. Machine Learning for Signal Processing, 2005 IEEE Workshop on (2005) 375-380
6.	Malmstrom, J., Larsen, K., Malmstrom, L., Tufvesson, E., Parker, K., Marchese, J., Williamson, B., Hattan, S., Patterson, D., Martin, S., Graber, A., Juhasz, HP., Westergren-Thorsson, G., Marko-Varga, G. Proteome annotations and identifications of the human pulmonary fibroblast. J Proteome Res (2004), 3: 525-37.
5.	Hazbun, TR., Malmstrom, L., Anderson, S., Graczyk, BJ., Fox, B., Riffle, M., Sundin, BA., Aranda, JD., McDonald, WH., Chiu, CH., Snydsman, BE., Bradley, P., Muller, EG., Fields, S., Baker, D., Yates, JR., Davis, TN. Assigning function to yeast proteins by integration of technologies. Mol Cell (2003), 12: 1353-65.
4.	Malmstrom, J., Larsen, K., Malmstrom, L., Tufvesson, E., Parker, K., Marchese, J., Williamson, B., Patterson, D., Martin, S., Juhasz, P., Westergren-Thorsson, G., Marko-Varga, G. Nanocapillary liquid chromatography interfaced to tandem matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry: Mapping the nuclear proteome of human fibroblasts. Electrophoresis (2003), 24: 3806-14.
3.	Chivian, D., Kim, DE., Malmstrom, L., Bradley, P., Robertson, T., Murphy, P., Strauss, CE., Bonneau, R., Rohl, CA., Baker, D. Automated prediction of CASP-5 structures using the Robetta server. Proteins (2003), 53: 524-33.
2.	Malmstrom, L., Malmstrom, J., Marko-Varga, G., Westergren-Thorsson, G. Proteomic 2DE database for spot selection, automated annotation, and data analysis. J Proteome Res (2002), 1: 135-8.
1.	Bonneau, R., Strauss, C., Rohl, C., Chivian, D., Bradley, P., Malmstrom, L., Robertson, T., Baker, D. De Novo Prediction of Three-dimensional Structures for Major Protein Families. J Mol Biol (2002), 322: 65.