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Bioinformatics challenges in Targeted Proteomics in Proteomics

Bioinformatics challenges in Targeted Proteomics in Proteomics: Targeted Technology, Innovations and Applications (2014). Edited by Manuel Fuentes and Joshua LaBaer (ISBN: 978-1-908230-46-1) Book at Amazon.com.

This chapter describes the bioinformatics challenges facing scientists doing targeted proteomics.

7 entries in Encyclopedia of Systems Biology

Contribued 7 entries to the encylopedia togehter with Ela Hunt and Andreas Quandt. Edited by Werner Dubitzky, Olaf Wolkenhauer, Hiroki Yokota, Kwang-Hyun Cho (ISBN 978-1-4419-9864-4) Book at Amazon.com.

Essay: Proteomics Data Capture by Lars Malmström, Andreas Quandt and Ela Hunt.

Essay: Proteome Analysis Pipeline by Lars Malmström, Andreas Quandt and Ela Hunt.

Definition: Proteomics by Lars Malmström, Andreas Quandt and Ela Hunt.

Definition: Proteome by Lars Malmström, Andreas Quandt and Ela Hunt.

Definition: Mass Spectrometer by Ela Hunt, Andreas Quandt, Lars Malmström.

Definition: Proteomics workflow by Lars Malmström, Andreas Quandt and Ela Hunt.

Definition: Proteomics Data Formats by Ela Hunt, Lars Malmström, Andreas Quandt.

Protein structure modeling

Chapter 5 Protein structure Modeling in Computational Biology, Volume 673: Methods in Molecular Biology, Springer Protocols, Humana Press, Edited by David Fenyo (ISBN-13: 978-1607618416) Book at Amazon.com.

This chapter describes how to model protein structures using online resources. For more information see Malmstrom, Lars; Goodlett, David; Protein structure modeling. Methods Mol Biol (2010), 673: 63-72..

Peptidomics

Chapter 11 Protein Bioinformatics in Proteomics & Peptidomics, Volume 46: New Technology Platforms Elucidating Biology (Comprehensive Analytical Chemistry) by Gyorgy Marko-Varga (ISBN-13: 978-0444518101) Book at Amazon.com.

This chapter gives an overview over protein bioinformatics in general and protein structure bioinformatics more specifically.